Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_3354TonB family protein. (836 aa)    
Predicted Functional Partners:
DB31_1054
TonB-dependent receptor.
 
 0.870
DB31_0911
TonB-dependent receptor.
 
 0.858
DB31_4227
Adventurous gliding motility protein S.
 
 
 0.804
DB31_4113
TonB family protein.
 
0.803
DB31_1057
Isochorismatase.
 
  
 0.790
DB31_0723
TonB-dependent receptor.
 
0.788
DB31_3355
Putative lipoprotein.
       0.784
DB31_0268
TonB family protein.
 
0.776
DB31_1033
Regulatory sensor-transducer, BlaR1/MecR1 family protein.
  
 0.771
DB31_4228
Hypothetical protein.
 
 
 0.767
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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