Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_3602TonB-dependent receptor. (1379 aa)    
Predicted Functional Partners:
DB31_3333
Hypothetical protein.
 
  
 0.883
DB31_1505
Hypothetical protein.
  
    0.756
DB31_1515
Hypothetical protein.
  
     0.742
DB31_3102
Hypothetical protein.
  
    0.739
DB31_1284
Hypothetical protein.
  
    0.736
DB31_1509
Hypothetical protein.
  
    0.725
DB31_1500
Hypothetical protein.
  
     0.704
DB31_4421
Hypothetical protein.
  
     0.703
DB31_3098
Hypothetical protein.
  
    0.687
DB31_1364
Hypothetical protein.
  
  
  0.677
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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