Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4029Hypothetical protein. (324 aa)    
Predicted Functional Partners:
DB31_4030
Hypothetical protein.
 
     0.733
DB31_5864
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily protein.
  
 
 0.629
DB31_4702
Two-component hybrid sensor and regulator.
    
 0.625
DB31_3208
Two-component hybrid sensor and regulator.
    
 0.584
DB31_5761
Signal transduction histidine kinase.
    
 0.566
DB31_5865
Type II/IV secretion system secretin; Belongs to the bacterial secretin family.
 
 0.551
DB31_0055
Hypothetical protein.
  
  
 0.535
DB31_2565
Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ).
  
  
 0.535
DB31_2686
Type II/IV secretion system secretin RcpA/CpaC.
  
 0.478
DB31_2872
Hypothetical protein.
  
 
 0.470
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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