Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4100Interphotoreceptor retinoid-binding protein. (412 aa)    
Predicted Functional Partners:
DB31_8152
Hypothetical protein.
  
 
   0.727
DB31_2703
Peptidase M23B.
  
  
 0.631
DB31_2761
Hypothetical protein.
  
     0.603
DB31_7495
Glutamyl endopeptidase precursor; Belongs to the peptidase S1B family.
  
     0.572
DB31_0870
Hypothetical protein.
   
   0.564
DB31_6310
Hypothetical protein.
   
 
 0.559
DB31_7664
Molybdenum cofactor biosynthesis enzyme.
  
 
   0.515
DB31_5025
Hypothetical protein.
  
     0.485
DB31_4099
Response regulator of zinc sigma-54-dependent two-component system.
       0.477
DB31_8025
Hypothetical protein.
  
     0.472
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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