Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DB31_4296Serine protease, subtilase family protein. (605 aa)    
Predicted Functional Partners:
DB31_0379
Chitinase.
  
     0.644
DB31_4643
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
   
   0.565
DB31_4297
Hypothetical protein.
       0.562
DB31_3323
Hypothetical protein.
  
  
  0.528
DB31_6657
Hypothetical protein.
  
     0.510
DB31_3869
F5/8 type C domain protein.
 
  
  0.499
DB31_3308
Hypothetical protein.
  
 
   0.495
DB31_8618
High-affinity leucine-specific transport system, periplasmic binding protein LivK.
  
    0.495
DB31_8231
High-affinity leucine-specific transport system, periplasmic binding protein LivK.
  
    0.481
DB31_2219
High-affinity leucine-specific transport system, periplasmic binding protein LivK.
  
    0.480
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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