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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4322Permease YjgP/YjgQ family protein. (374 aa)    
Predicted Functional Partners:
DB31_4323
Membrane protein.
 
 0.999
DB31_3656
Lipopolysaccharide ABC transporter, ATP-binding protein LptB.
 
 
 0.997
DB31_4325
Hypothetical protein.
 
     0.832
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
       0.814
purH
IMP cyclohydrolase.
       0.810
lptD
Outer membrane protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
 
 0.809
DB31_2721
Outer membrane protein assembly factor YaeT precursor.
 
   
 0.668
DB31_2722
Hypothetical protein.
 
   
 0.657
DB31_4194
Hypothetical protein.
  
     0.657
DB31_7373
Tetratricopeptide repeat domain protein.
  
     0.631
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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