Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4355TPR domain protein, putative component of TonB system. (1132 aa)    
Predicted Functional Partners:
DB31_4354
Hypothetical protein.
 
     0.944
DB31_4358
Hypothetical protein.
 
     0.925
DB31_4353
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
 
     0.900
DB31_4228
Hypothetical protein.
 
  
 0.816
DB31_4356
Adenylate cyclase.
       0.796
DB31_4982
Hypothetical protein.
 
  
 0.796
DB31_4227
Adventurous gliding motility protein S.
 
  
 0.791
DB31_5635
Putative lipoprotein.
  
     0.767
DB31_4357
Hypothetical protein.
       0.758
DB31_2824
Hypothetical protein.
  
   
 0.753
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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