Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DB31_4367Muramoyltetrapeptide carboxypeptidase. (299 aa)    
Predicted Functional Partners:
DB31_4365
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase.
 
  
 0.936
DB31_4366
Beta-lactamase class C and other penicillin binding protein.
 
     0.923
DB31_3676
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.841
DB31_4364
Thioredoxin family protein.
       0.772
DB31_4363
Inositol-1-monophosphatase.
       0.769
DB31_9001
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.756
DB31_1649
Cell division protein FtsI.
    
 0.573
DB31_4368
Hypothetical protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.543
DB31_6587
Hypothetical protein.
  
     0.526
DB31_6388
Uracil-DNA glycosylase, family 4.
   
    0.502
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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