Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4380High-affnity carbon uptake protein Hat/HatR. (1181 aa)    
Predicted Functional Partners:
DB31_4504
Hypothetical protein.
 
 
  0.847
DB31_2932
DNA recombination protein RmuC.
 
 
  0.815
DB31_4379
Hypothetical protein.
 
    
0.774
DB31_4378
High-affnity carbon uptake protein Hat/HatR.
 
    
0.754
DB31_0776
Hypothetical protein.
 
  
  0.736
DB31_5300
Hypothetical protein.
    0.693
DB31_2189
Hypothetical protein.
 
 
 0.686
DB31_2589
Hypothetical protein.
 
 
 0.680
DB31_1031
Hypothetical protein.
 
 
 0.675
DB31_5032
Glutamate synthase [NADPH] large chain.
     
  0.672
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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