Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4398Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
DB31_5240
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.748
DB31_3367
LysR family transcriptional regulator YnfL; Belongs to the LysR transcriptional regulatory family.
  
     0.741
DB31_3928
Transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.721
DB31_2488
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.715
DB31_4399
Permeases of the major facilitator protein.
 
     0.664
DB31_6621
LysR family transcriptional regulator YnfL; Belongs to the LysR transcriptional regulatory family.
  
     0.655
DB31_8036
Hydrogen peroxide-inducible activator; Belongs to the LysR transcriptional regulatory family.
  
     0.634
DB31_0793
Transcriptional regulator, LysR family protein.
  
     0.428
DB31_5006
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.428
DB31_4400
Hypothetical protein.
       0.414
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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