Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4530ABC transporter, ATPase subunit protein. (272 aa)    
Predicted Functional Partners:
DB31_4529
Hypothetical protein.
       0.792
DB31_4528
Putative membrane protein.
       0.768
DB31_7190
Hypothetical protein.
 
 
 0.690
DB31_0697
ABC-type transporter, permease protein.
 
 
 0.671
DB31_8321
ABC-type multidrug transport system, permease component.
 
 
 0.664
DB31_1706
Hypothetical protein.
  
 0.592
DB31_0417
Amino acid ABC transporter, permease protein.
    
 0.549
DB31_0766
Amino acid ABC transporter binding protein and permease protein.
    
 0.549
DB31_6152
Hypothetical protein.
  
 0.545
DB31_8280
Putative membrane spanning protein.
  
 0.544
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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