Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_4635Trans-aconitate 2-methyltransferase. (254 aa)    
Predicted Functional Partners:
DB31_0222
Long-chain-fatty-acid--CoA ligase.
  
 
 0.930
DB31_4821
Glutamate-1-semialdehyde aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.812
DB31_0096
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.802
DB31_4636
Hypothetical protein.
       0.648
DB31_0112
Long-chain-fatty-acid--CoA ligase.
  
 
 0.645
DB31_6498
Modular polyketide synthase; Belongs to the P-Pant transferase superfamily.
    
 0.609
DB31_6481
Phenolpthiocerol synthesis type-I polyketide synthase PPSD.
    
 0.597
DB31_6459
Long-chain-fatty-acid--CoA ligase.
  
 
 0.589
DB31_4450
Oxidoreductase (flavoprotein).
  
    0.575
DB31_6495
Hypothetical protein.
    
 0.574
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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