Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DB31_5083Type IV fimbrial assembly, ATPase PilB. (224 aa)    
Predicted Functional Partners:
DB31_6145
Type IV fimbrial assembly protein PilC.
 
 
 0.884
DB31_2874
General secretion pathway protein F.
 
 
 0.865
DB31_0409
General secretion pathway protein F.
 
 
 0.849
DB31_4460
Pilin.
 
  0.778
DB31_6155
Pilin.
 
  0.766
DB31_2735
Type IV pilus biogenesis protein PilM.
 
 
 
 0.765
DB31_3630
Pilin.
 
  0.752
DB31_2738
Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.731
DB31_6144
Twitching motility protein PilT.
 
  
 0.690
DB31_5998
FrgA.
  
     0.683
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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