STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO49866.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (543 aa)    
Predicted Functional Partners:
SEO49845.1
Peptide/nickel transport system permease protein.
 
 0.908
SEO49816.1
Peptide/nickel transport system permease protein.
 
 
 0.901
SEP52294.1
Energy-coupling factor transport system permease protein.
  
 0.846
SEO49789.1
Peptide/nickel transport system substrate-binding protein.
  
 
 0.828
SEP38898.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
0.802
SEO49899.1
Glucokinase.
       0.779
menG
2-octaprenyl-6-methoxy-1,4-benzoquinone methylase /demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
       0.705
SEO84618.1
Peptide/nickel transport system permease protein.
 
 0.669
SEO89783.1
Peptide/nickel transport system permease protein.
 
 0.669
SEP44546.1
Peptide/nickel transport system permease protein.
 
 0.656
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.