STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO51856.1Transmembrane secretion effector. (404 aa)    
Predicted Functional Partners:
SEP54173.1
EspG family protein.
  
     0.574
SEP49455.1
Transmembrane secretion effector.
  
     0.557
tmk-2
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
  
  0.546
SEO52981.1
Hypothetical protein.
  
     0.534
SEP52222.1
Hypothetical protein.
  
     0.528
SEP41460.1
Hypothetical protein.
  
     0.497
SEP34563.1
Hypothetical protein.
  
     0.458
SEP24584.1
Hypothetical protein.
  
     0.446
SEO82196.1
Dipeptidyl-peptidase-4.
  
     0.441
SEP40851.1
Helix-turn-helix domain-containing protein.
  
  
  0.431
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.