STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO44698.1Lsr2 protein. (131 aa)    
Predicted Functional Partners:
SEP54205.1
Lipoic acid synthetase.
  
     0.680
SEP53436.1
Protein of unknown function.
  
     0.635
SEP53232.1
Hypothetical protein.
  
     0.619
SEP42139.1
MaoC like domain-containing protein.
  
   
 0.585
SEO60709.1
Protein of unknown function.
  
     0.579
SEP53422.1
Protein of unknown function.
  
     0.572
SEP41421.1
Sugar phosphate isomerase/epimerase.
  
     0.551
SEP27896.1
Protein of unknown function.
  
     0.511
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
   
 0.482
SEP35700.1
Protein of unknown function.
  
     0.469
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.