SEP37724.1 protein (Amycolatopsis saalfeldensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEP37724.1

Enoyl-(Acyl carrier protein) reductase. (273 aa)

Predicted Functional Partners:

SEP48378.1

0.900

SEP37737.1

0.754

SEP48388.1

0.728

SEO77265.1

0.716

SEO77309.1

0.716

SEO77475.1

0.716

SEP53569.1

0.716

SEP53570.1

0.716

SEP53571.1

0.716

SEO46996.1

0.700

Your Current Organism:

Amycolatopsis saalfeldensis

NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEO46996.1	SEO77265.1	SAMN04489732_101129	SAMN04489732_10278	Malonyl CoA-acyl carrier protein transacylase.	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	0.992
SEO46996.1	SEO77309.1	SAMN04489732_101129	SAMN04489732_10281	Malonyl CoA-acyl carrier protein transacylase.	Polyketide synthase 12.	0.992
SEO46996.1	SEO77475.1	SAMN04489732_101129	SAMN04489732_10288	Malonyl CoA-acyl carrier protein transacylase.	Polyene macrolide polyketide synthase.	0.992
SEO46996.1	SEP37724.1	SAMN04489732_101129	SAMN04489732_10754	Malonyl CoA-acyl carrier protein transacylase.	Enoyl-(Acyl carrier protein) reductase.	0.700
SEO46996.1	SEP37737.1	SAMN04489732_101129	SAMN04489732_10756	Malonyl CoA-acyl carrier protein transacylase.	3-oxoacyl-[acyl-carrier protein] reductase.	0.700
SEO46996.1	SEP48378.1	SAMN04489732_101129	SAMN04489732_11218	Malonyl CoA-acyl carrier protein transacylase.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SEO46996.1	SEP48388.1	SAMN04489732_101129	SAMN04489732_11223	Malonyl CoA-acyl carrier protein transacylase.	Amino acid adenylation domain-containing protein.	0.999
SEO46996.1	SEP53569.1	SAMN04489732_101129	SAMN04489732_12856	Malonyl CoA-acyl carrier protein transacylase.	Erythronolide synthase docking.	0.992
SEO46996.1	SEP53570.1	SAMN04489732_101129	SAMN04489732_12857	Malonyl CoA-acyl carrier protein transacylase.	Erythronolide synthase.	0.998
SEO46996.1	SEP53571.1	SAMN04489732_101129	SAMN04489732_12860	Malonyl CoA-acyl carrier protein transacylase.	Polyketide synthase 12.	0.998
SEO77265.1	SEO46996.1	SAMN04489732_10278	SAMN04489732_101129	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Malonyl CoA-acyl carrier protein transacylase.	0.992
SEO77265.1	SEO77309.1	SAMN04489732_10278	SAMN04489732_10281	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Polyketide synthase 12.	0.996
SEO77265.1	SEO77475.1	SAMN04489732_10278	SAMN04489732_10288	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Polyene macrolide polyketide synthase.	0.991
SEO77265.1	SEP37724.1	SAMN04489732_10278	SAMN04489732_10754	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Enoyl-(Acyl carrier protein) reductase.	0.716
SEO77265.1	SEP37737.1	SAMN04489732_10278	SAMN04489732_10756	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	3-oxoacyl-[acyl-carrier protein] reductase.	0.716
SEO77265.1	SEP48378.1	SAMN04489732_10278	SAMN04489732_11218	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
SEO77265.1	SEP48388.1	SAMN04489732_10278	SAMN04489732_11223	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Amino acid adenylation domain-containing protein.	0.999
SEO77265.1	SEP53569.1	SAMN04489732_10278	SAMN04489732_12856	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Erythronolide synthase docking.	0.990
SEO77265.1	SEP53570.1	SAMN04489732_10278	SAMN04489732_12857	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Erythronolide synthase.	0.997
SEO77265.1	SEP53571.1	SAMN04489732_10278	SAMN04489732_12860	KS-AT-KR-ACP domain-containing polyene macrolide polyketide synthase.	Polyketide synthase 12.	0.997