STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP50545.1DNA methylase. (316 aa)    
Predicted Functional Partners:
SEP50543.1
Recombinase.
 
     0.900
SEP50541.1
Hypothetical protein.
 
     0.804
SEP50547.1
Hypothetical protein.
       0.787
SEP50539.1
Hypothetical protein.
       0.773
SEP50549.1
Hypothetical protein.
  
     0.772
SEP53405.1
Transcriptional activator domain-containing protein.
  
     0.767
SEP50551.1
Hypothetical protein.
  
     0.762
SEP53396.1
Hypothetical protein.
  
     0.762
SEP54532.1
Hypothetical protein.
  
     0.759
SEP54520.1
Hypothetical protein.
  
     0.758
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.