STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP51240.1Hypothetical protein. (371 aa)    
Predicted Functional Partners:
SEP51235.1
EspG family protein.
       0.757
SEP51237.1
Hypothetical protein.
       0.756
SEP51230.1
Hypothetical protein.
  
  0.722
SEP51232.1
Excreted virulence factor EspC, type VII ESX diderm.
       0.673
SEP51233.1
YbaB/EbfC DNA-binding family protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
    0.667
SEP47143.1
PKD domain-containing protein.
    
 0.627
SEP47165.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
    
 0.627
SEP50970.1
Protein of unknown function.
    
  0.605
SEO62269.1
Hypothetical protein.
    
   0.563
SEP50405.1
Unsaturated chondroitin disaccharide hydrolase.
    
   0.563
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.