STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP51789.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
SEP51788.1
Spermine/spermidine synthase.
 
     0.822
SEP51790.1
Uncharacterized HhH-GPD family protein.
       0.773
SEP51787.1
Predicted arabinose efflux permease, MFS family.
       0.634
SEP54107.1
Multimeric flavodoxin WrbA.
  
     0.531
SEP49953.1
Enterochelin esterase.
  
     0.516
SEP51786.1
DNA-binding transcriptional regulator, ArsR family.
       0.452
SEO76594.1
Hypothetical protein.
  
     0.416
SEP52290.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.412
SEP46228.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.