STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP52233.1DNA-binding transcriptional regulator YbjK. (202 aa)    
Predicted Functional Partners:
SEP52232.1
Hypothetical protein.
 
     0.757
SEP52231.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.675
SEP33681.1
Hypothetical protein.
  
     0.660
SEP45440.1
Hypothetical protein.
  
     0.654
SEP52487.1
Hypothetical protein.
  
     0.627
SEP20999.1
Hypothetical protein.
  
     0.625
SEP41608.1
Hypothetical protein.
  
     0.600
SEP52605.1
Hypothetical protein.
  
     0.600
SEO62356.1
Protein of unknown function.
  
     0.597
SEO79498.1
Hypothetical protein.
  
     0.594
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.