STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP52268.1Choline dehydrogenase. (522 aa)    
Predicted Functional Partners:
SEP54202.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.714
SEP54204.1
Choline dehydrogenase.
  
  
 
0.702
SEO88859.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.701
SEP54241.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
   
 
 0.691
SEO81992.1
Choline dehydrogenase.
  
  
 
0.678
SEO49318.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.620
SEP54197.1
1-pyrroline dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.620
SEP54414.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.620
SEP54543.1
Betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.620
SEP09284.1
WD40 repeat.
    
  0.607
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.