STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP54155.1ADP-ribose pyrophosphatase YjhB, NUDIX family. (240 aa)    
Predicted Functional Partners:
SEP41314.1
Hypothetical protein.
 
  
  0.751
SEP50952.1
Surface antigen.
  
     0.711
SEP49676.1
Peptidase A4 family protein.
  
     0.684
SEP49864.1
3D (Asp-Asp-Asp) domain-containing protein.
  
     0.682
SEP38134.1
Glyoxalase-like domain-containing protein.
  
     0.658
SEP53769.1
Hypothetical protein.
  
     0.642
SEP43780.1
Acetyltransferase (GNAT) family protein.
  
     0.637
SEP38116.1
Hypothetical protein.
  
     0.633
SEP00608.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.626
SEP54158.1
Hypothetical protein.
  
     0.618
Your Current Organism:
Amycolatopsis saalfeldensis
NCBI taxonomy Id: 394193
Other names: A. saalfeldensis, Amycolatopsis saalfeldensis Carlsohn et al. 2007, DSM 44993, HKI 0457, JCM 14909, NRRL B-24474
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