STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABI64548.1KEGG: pha:PSHAa1749 alginate lyase precursor. (740 aa)    
Predicted Functional Partners:
ABI64549.1
PFAM: Heparinase II/III family protein; KEGG: sde:Sde_3284 hypothetical protein.
 
  
  0.974
ABI64551.1
PFAM: major facilitator superfamily MFS_1; KEGG: pha:PSHAa1746 putative hexuronate transport protein (MFS family).
 
    0.951
ABI64550.1
PFAM: Cupin 2, conserved barrel domain protein; KEGG: sde:Sde_3283 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains).
 
   
 0.947
ABI64552.1
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: sde:Sde_3281 protein of unknown function DM13.
 
     0.909
ABI64547.1
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sde:Sde_3287 transcriptional regulator, GntR family.
 
     0.870
ABI64546.1
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sde:Sde_2991 hypothetical protein.
 
     0.831
ABI64553.1
2-keto-3-deoxygluconate kinase; PFAM: PfkB domain protein; KEGG: sfx:S4209 ketodeoxygluconokinase.
       0.641
ABI64554.1
Hypothetical protein.
       0.634
ABI64555.1
KEGG: ccr:CC1509 2-keto-4-pentenoate hydratase, putative.
       0.634
ABI64653.1
PFAM: major facilitator superfamily MFS_1; KEGG: ccr:CC0336 major facilitator family transporter.
 
    0.502
Your Current Organism:
Maricaulis maris
NCBI taxonomy Id: 394221
Other names: M. maris MCS10, Maricaulis maris MCS10, Maricaulis maris str. MCS10, Maricaulis maris strain MCS10
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