Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFS38234.1 | SFS53869.1 | SAMN04488040_0113 | SAMN04488040_0816 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | 0.468 |
SFS38234.1 | SFT11353.1 | SAMN04488040_0113 | SAMN04488040_3220 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B. | 0.656 |
SFS38234.1 | cmk | SAMN04488040_0113 | SAMN04488040_1404 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.919 |
SFS38234.1 | der | SAMN04488040_0113 | SAMN04488040_0352 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.913 |
SFS53869.1 | SFS38234.1 | SAMN04488040_0816 | SAMN04488040_0113 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.468 |
SFS53869.1 | SFT11353.1 | SAMN04488040_0816 | SAMN04488040_3220 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B. | 0.639 |
SFS53869.1 | cmk | SAMN04488040_0816 | SAMN04488040_1404 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.877 |
SFS53869.1 | der | SAMN04488040_0816 | SAMN04488040_0352 | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.816 |
SFS57178.1 | SFT11353.1 | SAMN04488040_1040 | SAMN04488040_3220 | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | Segregation and condensation protein B. | 0.997 |
SFS57178.1 | cmk | SAMN04488040_1040 | SAMN04488040_1404 | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | Cytidylate kinase. | 0.813 |
SFS57178.1 | smc | SAMN04488040_1040 | SAMN04488040_3392 | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.995 |
SFT11343.1 | SFT11353.1 | SAMN04488040_3219 | SAMN04488040_3220 | Hypothetical protein. | Segregation and condensation protein B. | 0.464 |
SFT11343.1 | SFT11363.1 | SAMN04488040_3219 | SAMN04488040_3221 | Hypothetical protein. | Protein of unknown function. | 0.464 |
SFT11353.1 | SFS38234.1 | SAMN04488040_3220 | SAMN04488040_0113 | Segregation and condensation protein B. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.656 |
SFT11353.1 | SFS53869.1 | SAMN04488040_3220 | SAMN04488040_0816 | Segregation and condensation protein B. | Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. | 0.639 |
SFT11353.1 | SFS57178.1 | SAMN04488040_3220 | SAMN04488040_1040 | Segregation and condensation protein B. | Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.997 |
SFT11353.1 | SFT11343.1 | SAMN04488040_3220 | SAMN04488040_3219 | Segregation and condensation protein B. | Hypothetical protein. | 0.464 |
SFT11353.1 | SFT11363.1 | SAMN04488040_3220 | SAMN04488040_3221 | Segregation and condensation protein B. | Protein of unknown function. | 0.950 |
SFT11353.1 | SFT11377.1 | SAMN04488040_3220 | SAMN04488040_3222 | Segregation and condensation protein B. | Site-specific recombinase XerD; Belongs to the 'phage' integrase family. | 0.872 |
SFT11353.1 | cmk | SAMN04488040_3220 | SAMN04488040_1404 | Segregation and condensation protein B. | Cytidylate kinase. | 0.788 |
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