Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LIMA1LIM domain and actin binding 1. (761 aa)    
Predicted Functional Partners:
ACTBL2
Actin beta like 2.
   
 
 0.746
ACTG2
Actin gamma 2, smooth muscle.
   
 
 0.734
ACTC1
Actin alpha cardiac muscle 1.
   
 
 0.731
MYO7B
Myosin VIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
  
 0.716
SULT1C2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.713
ANLN
Anillin actin binding protein.
    
 
 0.706
ACTL10
Actin like 10; Belongs to the actin family.
   
 
 0.637
ALG6
Alpha-1,3-glucosyltransferase; Belongs to the ALG6/ALG8 glucosyltransferase family.
      
 0.601
VPS26A
VPS26, retromer complex component A.
      
 0.566
ENDOG
Endonuclease.
      
 0.549
Your Current Organism:
Saimiri boliviensis
NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis
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