Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ASCL1Achaete-scute family bHLH transcription factor 1. (135 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
   
 0.782
TCF3
Transcription factor 3.
   
 0.782
TCF12
Transcription factor 12.
   
 0.782
HES1
Hes family bHLH transcription factor 1.
   
 0.691
HES2
Hes family bHLH transcription factor 2.
   
 0.691
GSX2
GS homeobox 2.
   
 
 0.607
DLX2
Distal-less homeobox 2.
   
  
 0.606
ATOH1
Atonal bHLH transcription factor 1.
   
 
 0.602
NEUROD1
Neurogenic differentiation factor.
   
 
 0.566
DLX1
Distal-less homeobox 1.
   
  
 0.515
Your Current Organism:
Saimiri boliviensis
NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis
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