Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABT1Activator of basal transcription 1. (272 aa)    
Predicted Functional Partners:
RRP36
Ribosomal RNA processing 36.
   
 
 0.973
NGDN
Neuroguidin.
   
 
 0.935
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.920
BYSL
Bystin like.
   
 
 0.902
DDX10
RNA helicase.
   
 
 0.900
NOP14
NOP14 nucleolar protein.
   
 
 0.896
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
   
 
 0.889
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.882
PWP2
Uncharacterized protein.
   
 
 0.879
UTP25
UTP25 small subunit processor component.
   
 
 0.878
Your Current Organism:
Saimiri boliviensis
NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis
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