IDI1 protein (Saimiri boliviensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IDI1

Isopentenyl-diphosphate delta isomerase 1. (253 aa)

Predicted Functional Partners:

MVD

0.994

FDPS

0.956

GGPS1

0.953

HMGCS1

0.915

SQLE

0.895

MSMO1

0.860

LSS

0.826

MTHFR

0.802

ENSSBOP00000034325

0.763

CYP51A1

0.763

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYP51A1	HMGCS1	ENSSBOP00000038344	ENSSBOP00000007782	Uncharacterized protein; Belongs to the cytochrome P450 family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.908
CYP51A1	IDI1	ENSSBOP00000038344	ENSSBOP00000010092	Uncharacterized protein; Belongs to the cytochrome P450 family.	Isopentenyl-diphosphate delta isomerase 1.	0.763
CYP51A1	LSS	ENSSBOP00000038344	ENSSBOP00000027407	Uncharacterized protein; Belongs to the cytochrome P450 family.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.993
CYP51A1	MSMO1	ENSSBOP00000038344	ENSSBOP00000034283	Uncharacterized protein; Belongs to the cytochrome P450 family.	Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.	0.958
CYP51A1	MVD	ENSSBOP00000038344	ENSSBOP00000016291	Uncharacterized protein; Belongs to the cytochrome P450 family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	0.624
CYP51A1	SQLE	ENSSBOP00000038344	ENSSBOP00000037762	Uncharacterized protein; Belongs to the cytochrome P450 family.	Squalene epoxidase.	0.955
ENSSBOP00000034325	HMGCS1	ENSSBOP00000034325	ENSSBOP00000007782	Uncharacterized protein; Belongs to the cytochrome P450 family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.908
ENSSBOP00000034325	IDI1	ENSSBOP00000034325	ENSSBOP00000010092	Uncharacterized protein; Belongs to the cytochrome P450 family.	Isopentenyl-diphosphate delta isomerase 1.	0.763
ENSSBOP00000034325	LSS	ENSSBOP00000034325	ENSSBOP00000027407	Uncharacterized protein; Belongs to the cytochrome P450 family.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.931
ENSSBOP00000034325	MSMO1	ENSSBOP00000034325	ENSSBOP00000034283	Uncharacterized protein; Belongs to the cytochrome P450 family.	Methylsterol monooxygenase 1; Belongs to the sterol desaturase family.	0.958
ENSSBOP00000034325	MVD	ENSSBOP00000034325	ENSSBOP00000016291	Uncharacterized protein; Belongs to the cytochrome P450 family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	0.624
ENSSBOP00000034325	SQLE	ENSSBOP00000034325	ENSSBOP00000037762	Uncharacterized protein; Belongs to the cytochrome P450 family.	Squalene epoxidase.	0.955
FDPS	GGPS1	ENSSBOP00000006170	ENSSBOP00000030804	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	0.960
FDPS	HMGCS1	ENSSBOP00000006170	ENSSBOP00000007782	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.743
FDPS	IDI1	ENSSBOP00000006170	ENSSBOP00000010092	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Isopentenyl-diphosphate delta isomerase 1.	0.956
FDPS	LSS	ENSSBOP00000006170	ENSSBOP00000027407	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.	0.551
FDPS	MVD	ENSSBOP00000006170	ENSSBOP00000016291	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.	0.961
FDPS	SQLE	ENSSBOP00000006170	ENSSBOP00000037762	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	Squalene epoxidase.	0.471
GGPS1	FDPS	ENSSBOP00000030804	ENSSBOP00000006170	Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.960
GGPS1	HMGCS1	ENSSBOP00000030804	ENSSBOP00000007782	Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.550