ENSSBOP00000033125 protein (Saimiri boliviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSBOP00000033125

IF rod domain-containing protein; Belongs to the intermediate filament family. (471 aa)

Predicted Functional Partners:

UNC79

0.720

ENSSBOP00000013028

0.551

TFAP2A

0.547

GATA3

0.540

ACTR5

0.529

NFRKB

0.516

TFPT

0.512

ELF5

0.505

INO80D

0.481

TEAD3

0.480

Your Current Organism:

Saimiri boliviensis

NCBI taxonomy Id: 39432
Other names: Bolivian squirrel monkey, S. boliviensis boliviensis, Saimiri boliviensis boliviensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACTR5	ENSSBOP00000033125	ENSSBOP00000016867	ENSSBOP00000033125	Actin related protein 5; Belongs to the actin family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.529
ACTR5	INO80D	ENSSBOP00000016867	ENSSBOP00000007905	Actin related protein 5; Belongs to the actin family.	INO80 complex subunit D.	0.945
ACTR5	NFRKB	ENSSBOP00000016867	ENSSBOP00000028662	Actin related protein 5; Belongs to the actin family.	Nuclear factor related to kappaB binding protein.	0.997
ACTR5	TFPT	ENSSBOP00000016867	ENSSBOP00000032567	Actin related protein 5; Belongs to the actin family.	TCF3 fusion partner.	0.922
ELF5	ENSSBOP00000033125	ENSSBOP00000017783	ENSSBOP00000033125	E74 like ETS transcription factor 5.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.505
ELF5	GATA3	ENSSBOP00000017783	ENSSBOP00000009154	E74 like ETS transcription factor 5.	GATA binding protein 3.	0.589
ENSSBOP00000013028	ENSSBOP00000033125	ENSSBOP00000013028	ENSSBOP00000033125	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.551
ENSSBOP00000013028	UNC79	ENSSBOP00000013028	ENSSBOP00000003255	IF rod domain-containing protein; Belongs to the intermediate filament family.	Unc-79 homolog, NALCN channel complex subunit.	0.724
ENSSBOP00000033125	ACTR5	ENSSBOP00000033125	ENSSBOP00000016867	IF rod domain-containing protein; Belongs to the intermediate filament family.	Actin related protein 5; Belongs to the actin family.	0.529
ENSSBOP00000033125	ELF5	ENSSBOP00000033125	ENSSBOP00000017783	IF rod domain-containing protein; Belongs to the intermediate filament family.	E74 like ETS transcription factor 5.	0.505
ENSSBOP00000033125	ENSSBOP00000013028	ENSSBOP00000033125	ENSSBOP00000013028	IF rod domain-containing protein; Belongs to the intermediate filament family.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.551
ENSSBOP00000033125	GATA3	ENSSBOP00000033125	ENSSBOP00000009154	IF rod domain-containing protein; Belongs to the intermediate filament family.	GATA binding protein 3.	0.540
ENSSBOP00000033125	INO80D	ENSSBOP00000033125	ENSSBOP00000007905	IF rod domain-containing protein; Belongs to the intermediate filament family.	INO80 complex subunit D.	0.481
ENSSBOP00000033125	NFRKB	ENSSBOP00000033125	ENSSBOP00000028662	IF rod domain-containing protein; Belongs to the intermediate filament family.	Nuclear factor related to kappaB binding protein.	0.516
ENSSBOP00000033125	TEAD3	ENSSBOP00000033125	ENSSBOP00000011773	IF rod domain-containing protein; Belongs to the intermediate filament family.	Transcriptional enhancer factor TEF-5; Transcription factor which plays a key role in the Hippo signaling pathway, a pathway involved in organ size control and tumor suppression by restricting proliferation and promoting apoptosis.	0.480
ENSSBOP00000033125	TFAP2A	ENSSBOP00000033125	ENSSBOP00000012156	IF rod domain-containing protein; Belongs to the intermediate filament family.	Transcription factor AP-2 alpha.	0.547
ENSSBOP00000033125	TFPT	ENSSBOP00000033125	ENSSBOP00000032567	IF rod domain-containing protein; Belongs to the intermediate filament family.	TCF3 fusion partner.	0.512
ENSSBOP00000033125	UNC79	ENSSBOP00000033125	ENSSBOP00000003255	IF rod domain-containing protein; Belongs to the intermediate filament family.	Unc-79 homolog, NALCN channel complex subunit.	0.720
GATA3	ELF5	ENSSBOP00000009154	ENSSBOP00000017783	GATA binding protein 3.	E74 like ETS transcription factor 5.	0.589
GATA3	ENSSBOP00000033125	ENSSBOP00000009154	ENSSBOP00000033125	GATA binding protein 3.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.540