STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0007PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_2377 chromosome segregation ATPase. (257 aa)    
Predicted Functional Partners:
Ccel_0008
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cth:Cthe_2378 chromosome segregation DNA-binding protein; Belongs to the ParB family.
 
 
 0.993
Ccel_3483
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cth:Cthe_2362 ParB family protein; Belongs to the ParB family.
 
 
 0.911
Ccel_3306
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sha:SH2634 hypothetical protein; Belongs to the ParB family.
 
 
 0.895
Ccel_3163
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: aoe:Clos_1923 nuclease; Belongs to the ParB family.
 
 
 0.873
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 0.706
Ccel_2842
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
 
 0.678
Ccel_0009
KEGG: cth:Cthe_2379 hypothetical protein.
  
  
 0.561
Ccel_0601
PFAM: cell divisionFtsK/SpoIIIE; KEGG: cth:Cthe_1095 cell divisionFtsK/SpoIIIE.
  
  
 0.529
Ccel_1164
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
     
 0.517
Ccel_0016
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cpy:Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.507
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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