Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0019Hypothetical protein; KEGG: cbt:CLH_0458 sporulation peptidase YabG. (67 aa)    
Predicted Functional Partners:
Ccel_0017
TIGRFAM: spore coat protein, CotS family; KEGG: cth:Cthe_2398 putative spore coat protein.
 
  
 0.536
Ccel_0237
PFAM: peptidase U57 YabG; KEGG: cth:Cthe_2507 peptidase U57, YabG.
  
     0.536
Ccel_1150
Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cth:Cthe_0049 XRE family transcriptional regulator.
  
     0.520
Ccel_0020
PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 hypothetical protein.
       0.508
Ccel_0371
PFAM: sulfatase; KEGG: cac:CAC2802 phosphoglycerol transferase.
  
     0.441
Ccel_0021
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
 
   
 0.438
fhs
PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: cth:Cthe_2399 formate-tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
       0.436
Ccel_2212
KEGG: ckl:CKL_2814 hypothetical protein.
  
    0.423
Ccel_2480
TIGRFAM: stage V sporulation protein B; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00988 stage V sporulation protein B.
  
     0.423
Ccel_0024
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2407 AAA ATPase, central region.
 
     0.421
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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