Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_0025Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: cth:Cthe_2408 phage shock protein A, PspA. (243 aa)    
Predicted Functional Partners:
Ccel_0026
PFAM: GCN5-related N-acetyltransferase; KEGG: ckl:CKL_2298 acetyltransferase.
  
    0.701
Ccel_1382
PFAM: band 7 protein; KEGG: aoe:Clos_1045 band 7 protein.
  
  
 0.614
Ccel_0027
KEGG: cth:Cthe_2409 hypothetical protein.
       0.613
Ccel_0024
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2407 AAA ATPase, central region.
       0.509
Ccel_0028
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_2410 hypothetical protein.
       0.450
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.426
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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