Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0026PFAM: GCN5-related N-acetyltransferase; KEGG: ckl:CKL_2298 acetyltransferase. (164 aa)    
Predicted Functional Partners:
Ccel_0025
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: cth:Cthe_2408 phage shock protein A, PspA.
  
    0.701
Ccel_0027
KEGG: cth:Cthe_2409 hypothetical protein.
       0.678
Ccel_0028
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_2410 hypothetical protein.
       0.496
Ccel_0024
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2407 AAA ATPase, central region.
       0.438
Ccel_0029
Hypothetical protein; KEGG: hau:Haur_4114 multi-sensor signal transduction histidine kinase.
       0.412
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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