Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0033PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: cth:Cthe_2413 NLP/P60. (308 aa)    
Predicted Functional Partners:
Ccel_0032
Conserved hypothetical protein; KEGG: cth:Cthe_2412 SMC protein-like protein.
  
    0.634
Ccel_0031
PFAM: metallophosphoesterase; KEGG: cth:Cthe_2411 metallophosphoesterase.
       0.574
Ccel_2188
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: cpy:Cphy_1886 peptidoglycan binding domain-containing protein.
 
   
 0.533
acpS
Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
  
    0.506
Ccel_2906
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.490
Ccel_2749
PFAM: NLP/P60 protein; KEGG: dsy:DSY0034 hypothetical protein.
  
     0.471
Ccel_0029
Hypothetical protein; KEGG: hau:Haur_4114 multi-sensor signal transduction histidine kinase.
       0.464
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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