Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0036TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2416 peptidase. (463 aa)    
Predicted Functional Partners:
Ccel_0035
TIGRFAM: spore cortex-lytic enzyme; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase SleB; KEGG: cth:Cthe_2415 cell wall hydrolase, SleB.
 
  
 0.973
Ccel_1357
KEGG: cth:Cthe_2350 cell wall hydrolase, SleB.
 
  
 0.839
Ccel_0523
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
 
   
 0.770
Ccel_3013
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein.
 
   
 0.767
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.753
Ccel_3011
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: aoe:Clos_2720 spore germination protein.
 
   
 0.699
Ccel_0652
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: amt:Amet_1283 spore germination protein.
 
   
 0.695
Ccel_1356
KEGG: cth:Cthe_2351 hypothetical protein.
  
     0.694
Ccel_3014
PFAM: GerA spore germination protein; KEGG: aoe:Clos_2718 GerA spore germination protein.
 
    0.690
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
  
   
 0.675
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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