Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0040PFAM: Abortive infection protein; KEGG: cth:Cthe_2417 abortive infection protein. (338 aa)    
Predicted Functional Partners:
Ccel_1562
PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: cac:CAC2325 N-acetylglucosaminidase domain- and ChW repeat-containing cell wall hydrolase.
    
 
 0.537
Ccel_3341
KEGG: cth:Cthe_2072 hypothetical protein.
  
     0.523
Ccel_0039
PFAM: S-layer domain protein; KEGG: cth:Cthe_2877 S-layer-like domain-containing protein.
       0.464
Ccel_0401
KEGG: cth:Cthe_2901 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
     0.453
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.438
Ccel_1271
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpy:Cphy_1375 precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
   
    0.430
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
   
  
 0.423
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
   
  
 0.423
Ccel_1285
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: cpy:Cphy_1382 precorrin-8X methylmutase CbiC/CobH.
   
    0.411
Ccel_2076
KEGG: cth:Cthe_0889 putative transmembrane anti-sigma factor.
  
     0.406
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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