Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0042TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD. (328 aa)    
Predicted Functional Partners:
Ccel_0041
PFAM: IstB domain protein ATP-binding protein; KEGG: cth:Cthe_2418 DNA replication protein DnaC.
 
  
 0.946
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.767
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
  
     0.762
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.760
Ccel_1326
KEGG: cth:Cthe_0165 hypothetical protein.
  
     0.752
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.750
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.734
Ccel_2046
KEGG: cth:Cthe_0470 hypothetical protein.
  
     0.734
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
     0.731
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.718
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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