Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0045KEGG: cth:Cthe_2962 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase. (332 aa)    
Predicted Functional Partners:
Ccel_0047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2964 binding-protein-dependent transport systems inner membrane component.
 0.999
Ccel_0048
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2965 binding-protein-dependent transport systems inner membrane component.
 
 0.995
Ccel_0044
PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_2961 extracellular solute-binding protein.
 
 
 0.991
Ccel_0046
KEGG: cth:Cthe_2963 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase.
 
  
 
0.979
Ccel_1766
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component.
 
 0.971
Ccel_1767
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease protein.
 
 
 0.929
Ccel_0608
PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_0910 extracellular solute-binding protein.
 
 
 0.838
Ccel_1768
PFAM: extracellular solute-binding protein family 5; KEGG: tpd:Teth39_0202 extracellular solute-binding protein.
 
 
 0.810
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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