Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0068PFAM: integrase family protein; KEGG: amt:Amet_1594 phage integrase family protein; Belongs to the 'phage' integrase family. (461 aa)    
Predicted Functional Partners:
Ccel_0067
PFAM: integrase family protein; KEGG: cbl:CLK_1309 site-specific recombinase; Belongs to the 'phage' integrase family.
 
     0.927
Ccel_0069
PFAM: integrase family protein; KEGG: amt:Amet_1595 phage integrase family protein.
 
    
0.817
Ccel_0070
KEGG: cyt:cce_4564 hypothetical protein.
       0.773
xerC
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
     0.457
Ccel_0090
PFAM: phosphoribosyltransferase; KEGG: cth:Cthe_2248 phosphoribosyltransferase.
   
    0.446
Ccel_0066
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nwi:Nwi_2131 DEAD/DEAH box helicase.
  
    0.445
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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