Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0069PFAM: integrase family protein; KEGG: amt:Amet_1595 phage integrase family protein. (517 aa)    
Predicted Functional Partners:
Ccel_0067
PFAM: integrase family protein; KEGG: cbl:CLK_1309 site-specific recombinase; Belongs to the 'phage' integrase family.
 
     0.861
Ccel_0068
PFAM: integrase family protein; KEGG: amt:Amet_1594 phage integrase family protein; Belongs to the 'phage' integrase family.
 
    
0.817
Ccel_0070
KEGG: cyt:cce_4564 hypothetical protein.
       0.773
Ccel_0090
PFAM: phosphoribosyltransferase; KEGG: cth:Cthe_2248 phosphoribosyltransferase.
   
    0.446
Ccel_0066
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: nwi:Nwi_2131 DEAD/DEAH box helicase.
  
    0.445
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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