Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0076KEGG: gme:Gmet_2951 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
  
     0.533
Ccel_3326
KEGG: cac:CAC2342 hypothetical protein.
  
     0.531
Ccel_0077
Hypothetical protein; KEGG: fno:Fnod_0976 glycine cleavage system aminomethyltransferase T.
       0.506
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.490
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.480
Ccel_3150
KEGG: efa:EF2316 hypothetical protein.
  
     0.462
Ccel_1847
Hypothetical protein; KEGG: bat:BAS0421 prophage LambdaBa04, DNA binding protein, putative.
  
     0.416
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.