Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0091KEGG: cth:Cthe_2247 regulatory protein, MerR. (137 aa)    
Predicted Functional Partners:
Ccel_0093
PFAM: FlgN family protein; KEGG: cth:Cthe_2245 hypothetical protein.
 
  
 0.958
Ccel_0092
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM.
 
 
 0.957
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2243 flagellar hook-associated protein FlgK.
 
  
 0.823
Ccel_0158
PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 hypothetical protein.
 
     0.781
Ccel_0097
KEGG: cth:Cthe_2241 hypothetical protein.
 
  
 0.771
Ccel_2021
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein.
 
     0.745
Ccel_2045
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
  
    0.731
Ccel_0096
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: cth:Cthe_2242 flagellar hook-associated protein FlgL.
 
  
 0.728
Ccel_0094
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: von Willebrand factor type A; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2244 flagellar hook-associated protein FlgK.
 
  
 0.715
Ccel_1315
PFAM: type IV pilus assembly PilZ; KEGG: cth:Cthe_0488 type IV pilus assembly PilZ.
  
     0.714
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.