Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0107PFAM: FlgN family protein; KEGG: cth:Cthe_2216 hypothetical protein. (160 aa)    
Predicted Functional Partners:
Ccel_2928
KEGG: cth:Cthe_2695 hypothetical protein.
  
     0.771
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.762
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
  
     0.757
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
     0.750
Ccel_0301
KEGG: cth:Cthe_2712 hypothetical protein.
  
     0.746
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.746
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.744
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.740
Ccel_0092
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM.
 
     0.719
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
  
     0.718
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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