Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0108PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: LOC100082187; similar to kelch-like 5 (Drosophila); K10442 kelch-like protein 1/4/5. (445 aa)    
Predicted Functional Partners:
Ccel_2192
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ava:Ava_B0286 exonuclease.
  
     0.577
Ccel_1543
PFAM: cellulosome anchoring protein cohesin region; Fibronectin type III domain protein; KEGG: hypothetical protein.
  
     0.545
Ccel_0107
PFAM: FlgN family protein; KEGG: cth:Cthe_2216 hypothetical protein.
       0.462
Ccel_2403
PA14 domain protein; PFAM: Fibronectin type III domain protein; PA14 domain protein; KEGG: cth:Cthe_0316 PA14.
  
     0.443
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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