Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0112PFAM: SAF domain protein; KEGG: cac:CAC1974 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Ccel_0111
PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: cac:CAC0404 TPR repeat-containing serine/threonin protein kinase.
       0.781
Ccel_0113
Hypothetical protein; KEGG: rde:RD1_3835 chain length determinant domain protein.
       0.778
Ccel_0114
PFAM: type II secretion system protein E; KEGG: cbl:CLK_A0282 hypothetical protein.
  
  
 0.754
Ccel_0502
Hypothetical protein; KEGG: cac:CAC0037 MinD family ATPase.
  
  
 0.671
Ccel_0507
KEGG: cth:Cthe_1336 hypothetical protein.
  
  
 0.624
Ccel_0115
Hypothetical protein; KEGG: tfu:Tfu_2275 putative integral membrane protein.
       0.623
Ccel_0116
Hypothetical protein.
       0.559
Ccel_0117
Hypothetical protein.
       0.544
Ccel_0510
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV.
  
  
 0.535
Ccel_0512
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_0545 prepilin peptidase CpaA.
  
  
 0.535
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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