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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0116Hypothetical protein. (371 aa)    
Predicted Functional Partners:
Ccel_0117
Hypothetical protein.
       0.752
Ccel_0114
PFAM: type II secretion system protein E; KEGG: cbl:CLK_A0282 hypothetical protein.
       0.700
Ccel_0115
Hypothetical protein; KEGG: tfu:Tfu_2275 putative integral membrane protein.
       0.700
Ccel_0118
Hypothetical protein.
       0.674
Ccel_0119
Hypothetical protein.
       0.579
Ccel_0120
Hypothetical protein.
       0.579
Ccel_0111
PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: cac:CAC0404 TPR repeat-containing serine/threonin protein kinase.
       0.559
Ccel_0112
PFAM: SAF domain protein; KEGG: cac:CAC1974 hypothetical protein.
       0.559
Ccel_0113
Hypothetical protein; KEGG: rde:RD1_3835 chain length determinant domain protein.
       0.559
Ccel_0121
Hypothetical protein.
       0.538
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.