Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0122PFAM: Radical SAM domain protein; KEGG: cbk:CLL_A1020 radical SAM. (289 aa)    
Predicted Functional Partners:
Ccel_0123
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_3372 ABC transporter related.
 
     0.597
Ccel_0121
Hypothetical protein.
       0.489
Ccel_0124
PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ctc:CTC01856 ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
  
    0.483
Ccel_0119
Hypothetical protein.
       0.456
Ccel_0120
Hypothetical protein.
       0.456
Ccel_0125
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: cth:Cthe_2212 AraC family transcriptional regulator.
  
    0.404
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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