Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0142Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; KEGG: cpy:Cphy_1915 AraC family transcriptional regulator. (760 aa)    
Predicted Functional Partners:
Ccel_0145
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1918 extracellular solute-binding protein.
 
     0.794
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
 
   
 0.721
Ccel_2406
KEGG: cno:NT01CX_1598 hypothetical protein.
  
     0.612
Ccel_1213
PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.597
Ccel_1217
PFAM: Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.595
Ccel_1210
KEGG: mac:MA1194 hypothetical protein.
  
     0.590
Ccel_0974
PFAM: AMP-dependent synthetase and ligase; condensation domain protein; cobalamin B12-binding domain protein; phosphopantetheine-binding; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bwe:BcerKBAB4_1784 amino acid adenylation domain-containing protein.
  
     0.556
Ccel_1617
PFAM: GCN5-related N-acetyltransferase; KEGG: ton:TON_1418 ribosomal protein-alanine acetyltransferase.
  
     0.544
Ccel_3150
KEGG: efa:EF2316 hypothetical protein.
  
     0.538
Ccel_0691
PFAM: Coat F domain protein; KEGG: cac:CAC1335 spore coat protein F (cotf) related protein.
  
     0.508
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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