Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0145PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_1918 extracellular solute-binding protein. (530 aa)    
Predicted Functional Partners:
Ccel_0144
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpu:BPUM_2666 ABC transporter ATP-binding protein.
 
   0.874
Ccel_0143
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1916 binding-protein-dependent transport systems inner membrane component.
 
  
 0.857
Ccel_0142
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; KEGG: cpy:Cphy_1915 AraC family transcriptional regulator.
 
     0.794
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
    0.710
Ccel_3463
Carbohydrate-binding family 9; PFAM: Ig domain protein group 2 domain protein; Carbohydrate-binding family 9; KEGG: cth:Cthe_0912 glycoside hydrolase family protein.
  
     0.698
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
  
   0.668
Ccel_1254
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1066 hypothetical protein.
  
   0.663
Ccel_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_0393 binding-protein-dependent transport systems inner membrane component.
  
  
 0.654
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.642
Ccel_1011
PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_0531 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.638
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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